IL_8OVE_105

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCG*CAGC

Length

7 nucleotides

Bulged bases

8OVE|1|BA|A|287

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_105 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1336

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8OVE|1|BA|G|197
8OVE|1|BA|C|198
8OVE|1|BA|G|199
*
8OVE|1|BA|C|286
8OVE|1|BA|A|287
8OVE|1|BA|G|295
8OVE|1|BA|C|296

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BC

5.8S ribosomal RNA; 5.8S rRNA

Chain BZ

60S ribosomal protein L26, putative

Chain Br

60S ribosomal protein L4