IL_8OVE_139
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_139 not in the Motif Atlas
- Homologous match to IL_8C3A_033
- Geometric discrepancy: 0.0711
- The information below is about IL_8C3A_033
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
8OVE|1|BA|U|954
8OVE|1|BA|G|955
8OVE|1|BA|A|956
8OVE|1|BA|A|957
8OVE|1|BA|G|958
*
8OVE|1|BA|U|975
8OVE|1|BA|G|976
8OVE|1|BA|G|977
8OVE|1|BA|A|978
8OVE|1|BA|G|979
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BE
- SrRNA 1
- Chain BT
- 60S ribosomal protein L19, putative
- Chain Be
- 60S ribosomal protein L2, putative
- Chain Bo
- 60S ribosomal protein L37a, putative
Coloring options: