IL_8OVE_142
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- G(OMG)A*UCAUC
- Length
- 8 nucleotides
- Bulged bases
- 8OVE|1|BA|C|1040, 8OVE|1|BA|A|1041
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_142 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.0571
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8OVE|1|BA|G|1027
8OVE|1|BA|OMG|1028
8OVE|1|BA|A|1029
*
8OVE|1|BA|U|1039
8OVE|1|BA|C|1040
8OVE|1|BA|A|1041
8OVE|1|BA|U|1042
8OVE|1|BA|C|1043
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- Ribosomal protein L15
- Chain BR
- 60S ribosomal protein L17, putative
- Chain Be
- 60S ribosomal protein L2, putative
- Chain Bn
- Ribosomal protein L37
Coloring options: