IL_8OVE_157
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGUCAAAA*UGUGCGUGAUUG
- Length
- 20 nucleotides
- Bulged bases
- 8OVE|1|BA|C|1468, 8OVE|1|BA|G|1469, 8OVE|1|BA|U|1474
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_157 not in the Motif Atlas
- Geometric match to IL_5J7L_278
- Geometric discrepancy: 0.1423
- The information below is about IL_5J7L_278
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8OVE|1|BA|C|1307
8OVE|1|BA|G|1308
8OVE|1|BA|U|1309
8OVE|1|BA|C|1310
8OVE|1|BA|A|1311
8OVE|1|BA|A|1312
8OVE|1|BA|A|1313
8OVE|1|BA|A|1314
*
8OVE|1|BA|U|1464
8OVE|1|BA|G|1465
8OVE|1|BA|U|1466
8OVE|1|BA|G|1467
8OVE|1|BA|C|1468
8OVE|1|BA|G|1469
8OVE|1|BA|U|1470
8OVE|1|BA|G|1471
8OVE|1|BA|A|1472
8OVE|1|BA|U|1473
8OVE|1|BA|U|1474
8OVE|1|BA|G|1475
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BO
- 60S ribosomal protein L13a, putative
- Chain BP
- 40S ribosomal protein L14, putative
- Chain BS
- 60S ribosomal protein L18a
- Chain Bl
- 60S ribosomal protein L35A, putative
- Chain Bw
- 60S ribosomal protein L7, putative
Coloring options: