IL_8OVE_161
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAUACGUGAAAAG*CGAAAAUGGA(OMU)GACGC
- Length
- 29 nucleotides
- Bulged bases
- 8OVE|1|BA|U|1334, 8OVE|1|BA|U|1338, 8OVE|1|BA|A|1340, 8OVE|1|BA|A|1441, 8OVE|1|BA|U|1444
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_161 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1949
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8OVE|1|BA|G|1332
8OVE|1|BA|A|1333
8OVE|1|BA|U|1334
8OVE|1|BA|A|1335
8OVE|1|BA|C|1336
8OVE|1|BA|G|1337
8OVE|1|BA|U|1338
8OVE|1|BA|G|1339
8OVE|1|BA|A|1340
8OVE|1|BA|A|1341
8OVE|1|BA|A|1342
8OVE|1|BA|A|1343
8OVE|1|BA|G|1344
*
8OVE|1|BA|C|1438
8OVE|1|BA|G|1439
8OVE|1|BA|A|1440
8OVE|1|BA|A|1441
8OVE|1|BA|A|1442
8OVE|1|BA|A|1443
8OVE|1|BA|U|1444
8OVE|1|BA|G|1445
8OVE|1|BA|G|1446
8OVE|1|BA|A|1447
8OVE|1|BA|OMU|1448
8OVE|1|BA|G|1449
8OVE|1|BA|A|1450
8OVE|1|BA|C|1451
8OVE|1|BA|G|1452
8OVE|1|BA|C|1453
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- 5S ribosomal RNA; 5S rRNA
- Chain BK
- 60S ribosomal protein L10, putative
- Chain BO
- 60S ribosomal protein L13a, putative
- Chain BS
- 60S ribosomal protein L18a
- Chain Bf
- Ribosomal protein L3, mitochondrial, putative
- Chain Bs
- Ubiquitin-60S ribosomal protein L40
- Chain Bw
- 60S ribosomal protein L7, putative
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