IL_8OVE_169
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGCGU(A2M)(OMG)C*GCGAA(A2M)C
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_169 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.2419
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8OVE|1|BA|G|1615
8OVE|1|BA|G|1616
8OVE|1|BA|C|1617
8OVE|1|BA|G|1618
8OVE|1|BA|U|1619
8OVE|1|BA|A2M|1620
8OVE|1|BA|OMG|1621
8OVE|1|BA|C|1622
*
8OVE|1|BB|G|617
8OVE|1|BB|C|618
8OVE|1|BB|G|619
8OVE|1|BB|A|620
8OVE|1|BB|A|621
8OVE|1|BB|A2M|622
8OVE|1|BB|C|623
Current chains
- Chain BA
- LUS_alpha rRNA
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BR
- 60S ribosomal protein L17, putative
- Chain Br
- 60S ribosomal protein L4
Coloring options: