IL_8OVE_172
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGAG*CAACAG
- Length
- 11 nucleotides
- Bulged bases
- 8OVE|1|BA|C|1826, 8OVE|1|BA|A|1827
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_172 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.182
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8OVE|1|BA|C|1721
8OVE|1|BA|U|1722
8OVE|1|BA|G|1723
8OVE|1|BA|A|1724
8OVE|1|BA|G|1725
*
8OVE|1|BA|C|1823
8OVE|1|BA|A|1824
8OVE|1|BA|A|1825
8OVE|1|BA|C|1826
8OVE|1|BA|A|1827
8OVE|1|BA|G|1828
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BE
- SrRNA 1
- Chain Be
- 60S ribosomal protein L2, putative
- Chain Bj
- 60S ribosomal protein L34, putative
- Chain Bn
- Ribosomal protein L37
- Chain Bq
- 60S ribosomal protein L39, putative
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