IL_8OVE_177
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGG*CAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_177 not in the Motif Atlas
- Geometric match to IL_5MSF_001
- Geometric discrepancy: 0.1483
- The information below is about IL_5MSF_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.5
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 238
Unit IDs
8OVE|1|BA|U|1864
8OVE|1|BA|G|1865
8OVE|1|BA|G|1866
*
8OVE|1|BB|C|4
8OVE|1|BB|A|5
8OVE|1|BB|A|6
Current chains
- Chain BA
- LUS_alpha rRNA
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BE
- SrRNA 1
- Chain Bj
- 60S ribosomal protein L34, putative
- Chain Bp
- 60S ribosomal protein L38, putative
Coloring options: