IL_8OVE_187
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGAUGC*GUAUGUCG
- Length
- 14 nucleotides
- Bulged bases
- 8OVE|1|BB|U|423, 8OVE|1|BB|A|439, 8OVE|1|BB|C|443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_187 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.1629
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OVE|1|BB|U|420
8OVE|1|BB|G|421
8OVE|1|BB|A|422
8OVE|1|BB|U|423
8OVE|1|BB|G|424
8OVE|1|BB|C|425
*
8OVE|1|BB|G|437
8OVE|1|BB|U|438
8OVE|1|BB|A|439
8OVE|1|BB|U|440
8OVE|1|BB|G|441
8OVE|1|BB|U|442
8OVE|1|BB|C|443
8OVE|1|BB|G|444
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BE
- SrRNA 1
- Chain Be
- 60S ribosomal protein L2, putative
- Chain Bo
- 60S ribosomal protein L37a, putative
Coloring options: