IL_8OVE_204

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

U(OMG)UU*ACA

Length

7 nucleotides

Bulged bases

8OVE|1|BB|U|674

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_204 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.1932

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8OVE|1|BB|U|672
8OVE|1|BB|OMG|673
8OVE|1|BB|U|674
8OVE|1|BB|U|675
*
8OVE|1|BB|A|1265
8OVE|1|BB|C|1266
8OVE|1|BB|A|1267

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain Bb

60S ribosomal protein L27a

Chain Bd

60S ribosomal protein L29

Chain Br

60S ribosomal protein L4