IL_8OVE_209
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUGAAGA*UUGUU
- Length
- 12 nucleotides
- Bulged bases
- 8OVE|1|BB|G|786, 8OVE|1|BB|A|788, 8OVE|1|BB|G|789, 8OVE|1|BB|U|1026, 8OVE|1|BB|G|1027, 8OVE|1|BB|U|1028
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_209 not in the Motif Atlas
- Homologous match to IL_5TBW_096
- Geometric discrepancy: 0.2628
- The information below is about IL_5TBW_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8OVE|1|BB|A|784
8OVE|1|BB|U|785
8OVE|1|BB|G|786
8OVE|1|BB|A|787
8OVE|1|BB|A|788
8OVE|1|BB|G|789
8OVE|1|BB|A|790
*
8OVE|1|BB|U|1025
8OVE|1|BB|U|1026
8OVE|1|BB|G|1027
8OVE|1|BB|U|1028
8OVE|1|BB|U|1029
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BX
- 60S ribosomal protein L23a
- Chain Be
- 60S ribosomal protein L2, putative
- Chain Bx
- 60S ribosomal protein L7a
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