IL_8OVE_225

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

C(PSU)C*G(PSU)G(A2M)G

Length

8 nucleotides

Bulged bases

8OVE|1|BB|G|1399

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_225 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.4477

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8OVE|1|BB|C|1333
8OVE|1|BB|PSU|1334
8OVE|1|BB|C|1335
*
8OVE|1|BB|G|1397
8OVE|1|BB|PSU|1398
8OVE|1|BB|G|1399
8OVE|1|BB|A2M|1400
8OVE|1|BB|G|1401

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain BW

60S ribosomal protein L23, putative

Chain Bf

Ribosomal protein L3, mitochondrial, putative