IL_8OVE_231

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_231 not in the Motif Atlas

Geometric match to IL_3FOZ_001

Geometric discrepancy: 0.146

The information below is about IL_3FOZ_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8OVE|1|BB|G|1518
8OVE|1|BB|U|1519
8OVE|1|BB|G|1520
*
8OVE|1|BB|C|1528
8OVE|1|BB|U|1529
8OVE|1|BB|U|1530

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain Bf

Ribosomal protein L3, mitochondrial, putative

Chain Bh

60S ribosomal subunit protein L31, putative