IL_8OVE_246
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAG*UUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_246 not in the Motif Atlas
- Geometric match to IL_4E48_003
- Geometric discrepancy: 0.1747
- The information below is about IL_4E48_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.5
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 238
Unit IDs
8OVE|1|BE|G|52
8OVE|1|BE|A|53
8OVE|1|BE|G|54
*
8OVE|1|BE|U|62
8OVE|1|BE|U|63
8OVE|1|BE|C|64
Current chains
- Chain BE
- SrRNA 1
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- Large subunit ribosomal RNA; LSU rRNA
- Chain BT
- 60S ribosomal protein L19, putative
- Chain BV
- 60S ribosomal protein L22, putative
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