IL_8OVE_275
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- A(A2M)A*(OMU)UU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_275 not in the Motif Atlas
- Geometric match to IL_8C3A_413
- Geometric discrepancy: 0.2057
- The information below is about IL_8C3A_413
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.3
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 49
Unit IDs
8OVE|1|BA|A|761
8OVE|1|BA|A2M|762
8OVE|1|BA|A|763
*
8OVE|1|BA|OMU|916
8OVE|1|BA|U|917
8OVE|1|BA|U|918
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BI
- 60S ribosomal protein L18
- Chain BN
- 60S ribosomal protein L13
- Chain BQ
- Ribosomal protein L15
- Chain Bb
- 60S ribosomal protein L27a
- Chain Br
- 60S ribosomal protein L4
Coloring options: