IL_8OVE_278
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8OVE|1|BA|A|1053, 8OVE|1|BA|G|1057
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_278 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.085
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8OVE|1|BA|OMG|925
8OVE|1|BA|A|926
8OVE|1|BA|A2M|927
8OVE|1|BA|A|928
8OVE|1|BA|G|929
*
8OVE|1|BA|C|1051
8OVE|1|BA|U|1052
8OVE|1|BA|A|1053
8OVE|1|BA|G|1054
8OVE|1|BA|U|1055
8OVE|1|BA|A|1056
8OVE|1|BA|G|1057
8OVE|1|BA|C|1058
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BN
- 60S ribosomal protein L13
- Chain BQ
- Ribosomal protein L15
- Chain Bb
- 60S ribosomal protein L27a
- Chain Bn
- Ribosomal protein L37
- Chain Br
- 60S ribosomal protein L4
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