IL_8OVE_280
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCAAA(PSU)*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8OVE|1|BA|A|1126
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_280 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.3717
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8OVE|1|BA|G|1124
8OVE|1|BA|C|1125
8OVE|1|BA|A|1126
8OVE|1|BA|A|1127
8OVE|1|BA|A|1128
8OVE|1|BA|PSU|1129
*
8OVE|1|BA|A|1171
8OVE|1|BA|A|1172
8OVE|1|BA|A|1173
8OVE|1|BA|C|1174
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- 5S ribosomal RNA; 5S rRNA
- Chain BK
- 60S ribosomal protein L10, putative
- Chain BU
- 60S ribosomal protein L21E, putative
- Chain Bu
- 60S ribosomal protein L5, putative
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