IL_8OVE_288

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

8OVE|1|BB|A2M|545, 8OVE|1|BB|C|551, 8OVE|1|BB|C|570

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_288 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1014

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8OVE|1|BB|C|541
8OVE|1|BB|5MC|542
8OVE|1|BB|A|543
8OVE|1|BB|A|544
8OVE|1|BB|A2M|545
8OVE|1|BB|U|546
8OVE|1|BB|G|547
8OVE|1|BB|C|548
8OVE|1|BB|C|549
8OVE|1|BB|U|550
8OVE|1|BB|C|551
8OVE|1|BB|OMG|552
*
8OVE|1|BB|C|568
8OVE|1|BB|G|569
8OVE|1|BB|C|570
8OVE|1|BB|G|571

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain Bz

Ribosomal protein L41