IL_8OVE_293
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- (PSU)AACG*CGAG
- Length
- 9 nucleotides
- Bulged bases
- 8OVE|1|BB|A|1162, 8OVE|1|BB|C|1163
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_293 not in the Motif Atlas
- Geometric match to IL_2O3Y_003
- Geometric discrepancy: 0.3337
- The information below is about IL_2O3Y_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34618.2
- Basepair signature
- cWW-L-cWS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8OVE|1|BB|PSU|1160
8OVE|1|BB|A|1161
8OVE|1|BB|A|1162
8OVE|1|BB|C|1163
8OVE|1|BB|G|1164
*
8OVE|1|BB|C|1180
8OVE|1|BB|G|1181
8OVE|1|BB|A|1182
8OVE|1|BB|G|1183
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BI
- 60S ribosomal protein L18
- Chain BU
- 60S ribosomal protein L21E, putative
- Chain Bd
- 60S ribosomal protein L29
- Chain Bt
- 60S ribosomal protein L44
- Chain Bu
- 60S ribosomal protein L5, putative
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