IL_8OVE_294

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG*(PSU)CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_294 not in the Motif Atlas

Homologous match to IL_8P9A_329

Geometric discrepancy: 0.388

The information below is about IL_8P9A_329

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

8OVE|1|BB|G|1277
8OVE|1|BB|G|1278
*
8OVE|1|BB|PSU|1319
8OVE|1|BB|C|1320
8OVE|1|BB|C|1321

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BK

60S ribosomal protein L10, putative

Chain Bd

60S ribosomal protein L29