IL_8OZ0_027

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAU*AAUUG

Length

9 nucleotides

Bulged bases

8OZ0|1|W|U|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OZ0_027 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3396

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8OZ0|1|W|C|527
8OZ0|1|W|A|528
8OZ0|1|W|A|529
8OZ0|1|W|U|530
*
8OZ0|1|W|A|554
8OZ0|1|W|A|555
8OZ0|1|W|U|556
8OZ0|1|W|U|557
8OZ0|1|W|G|558

Current chains

Chain W

18S rRNA

Nearby chains

Chain I

Eukaryotic translation initiation factor 3 subunit B

Chain Z

40S ribosomal protein S9

Chain b

40S ribosomal protein S30