IL_8OZ0_039

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OZ0_039 not in the Motif Atlas

Homologous match to IL_8C3A_430

Geometric discrepancy: 0.1353

The information below is about IL_8C3A_430

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

8OZ0|1|W|A|802
8OZ0|1|W|C|803
*
8OZ0|1|W|G|860
8OZ0|1|W|A|861
8OZ0|1|W|A|862
8OZ0|1|W|U|863

Current chains

Chain W

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S7

Chain X

40S ribosomal protein S11

Chain c

40S ribosomal protein S15a