IL_8OZ0_051

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8OZ0|1|W|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OZ0_051 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1931

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8OZ0|1|W|G|952
8OZ0|1|W|C|953
8OZ0|1|W|U|954
8OZ0|1|W|A|955
8OZ0|1|W|G|956
*
8OZ0|1|W|C|967
8OZ0|1|W|U|968
8OZ0|1|W|U|969
8OZ0|1|W|G|970
8OZ0|1|W|G|971
8OZ0|1|W|A|972
8OZ0|1|W|C|973
8OZ0|1|W|C|974

Current chains

Chain W

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S3a

Chain T

40S ribosomal protein S14