IL_8OZ0_064

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OZ0_064 not in the Motif Atlas

Homologous match to IL_8C3A_451

Geometric discrepancy: 0.1319

The information below is about IL_8C3A_451

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_92540.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

32

Unit IDs

8OZ0|1|W|G|1235
8OZ0|1|W|G|1236
*
8OZ0|1|W|C|1521
8OZ0|1|W|A|1522
8OZ0|1|W|C|1523

Current chains

Chain W

18S rRNA

Nearby chains

Chain U

Eukaryotic translation initiation factor 2 subunit 2

Chain j

40S ribosomal protein S15

Chain n

Small ribosomal subunit protein uS13

Chain y

Transfer RNA; tRNA