IL_8OZ0_076

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAC*GUCCCCCA

Length

11 nucleotides

Bulged bases

8OZ0|1|W|C|1433, 8OZ0|1|W|C|1434, 8OZ0|1|W|C|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OZ0_076 not in the Motif Atlas

Homologous match to IL_8C3A_464

Geometric discrepancy: 0.4661

The information below is about IL_8C3A_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8OZ0|1|W|U|1408
8OZ0|1|W|A|1409
8OZ0|1|W|C|1410
*
8OZ0|1|W|G|1431
8OZ0|1|W|U|1432
8OZ0|1|W|C|1433
8OZ0|1|W|C|1434
8OZ0|1|W|C|1435
8OZ0|1|W|C|1436
8OZ0|1|W|C|1437
8OZ0|1|W|A|1438

Current chains

Chain W

18S rRNA

Nearby chains

Chain g

40S ribosomal protein S16

Chain w

40S ribosomal protein S20