IL_8OZ0_083

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

G(OMC)CC*G(UR3)A(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, UR3, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OZ0_083 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.1065

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8OZ0|1|W|G|1702
8OZ0|1|W|OMC|1703
8OZ0|1|W|C|1704
8OZ0|1|W|C|1705
*
8OZ0|1|W|G|1829
8OZ0|1|W|UR3|1830
8OZ0|1|W|A|1831
8OZ0|1|W|6MZ|1832
8OZ0|1|W|C|1833

Current chains

Chain W

18S rRNA

Nearby chains

Chain 9

60S ribosomal protein L41

Chain H

Eukaryotic translation initiation factor 5

Chain y

Transfer RNA; tRNA

Chain z

mRNA