IL_8OZ0_088

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

8OZ0|1|W|U|1721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OZ0_088 not in the Motif Atlas

Homologous match to IL_4V88_469

Geometric discrepancy: 0.5586

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8OZ0|1|W|U|1720
8OZ0|1|W|U|1721
8OZ0|1|W|G|1722
*
8OZ0|1|W|U|1812
8OZ0|1|W|A|1813

Current chains

Chain W

18S rRNA

Nearby chains

Chain a

40S ribosomal protein S23