IL_8OZ0_090

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OZ0_090 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.1046

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8OZ0|1|W|U|1733
8OZ0|1|W|G|1734
8OZ0|1|W|A|1735
8OZ0|1|W|G|1736
*
8OZ0|1|W|C|1798
8OZ0|1|W|G|1799
8OZ0|1|W|A|1800
8OZ0|1|W|A|1801

Current chains

Chain W

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6

Chain d

40S ribosomal protein S8