IL_8OZ0_092

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OZ0_092 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.1752

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8OZ0|1|W|C|1742
8OZ0|1|W|G|1743
8OZ0|1|W|G|1744
8OZ0|1|W|A|1745
8OZ0|1|W|U|1746
*
8OZ0|1|W|A|1788
8OZ0|1|W|G|1789
8OZ0|1|W|A|1790
8OZ0|1|W|A|1791
8OZ0|1|W|G|1792

Current chains

Chain W

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6

Chain d

40S ribosomal protein S8