IL_8OZ0_095

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCACU*A(OMG)

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OZ0_095 not in the Motif Atlas

Homologous match to IL_8C3A_416

Geometric discrepancy: 0.12

The information below is about IL_8C3A_416

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

8OZ0|1|W|C|491
8OZ0|1|W|C|492
8OZ0|1|W|A|493
8OZ0|1|W|C|494
8OZ0|1|W|U|495
*
8OZ0|1|W|A|508
8OZ0|1|W|OMG|509

Current chains

Chain W

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S4, X isoform

Chain Z

40S ribosomal protein S9

Chain e

40S ribosomal protein S24