IL_8P03_016

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

8P03|1|2|U|296, 8P03|1|2|G|299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P03_016 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3511

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

8P03|1|2|C|213
8P03|1|2|A|214
8P03|1|2|U|215
8P03|1|2|U|216
*
8P03|1|2|A|293
8P03|1|2|C|294
8P03|1|2|C|295
8P03|1|2|U|296
8P03|1|2|C|297
8P03|1|2|G|298
8P03|1|2|G|299
8P03|1|2|G|300

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain K

40S ribosomal protein S8