IL_8P03_020
3D structure
- PDB id
- 8P03 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with m6A mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 8P03|1|2|U|351, 8P03|1|2|C|389
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P03_020 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.1228
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8P03|1|2|U|349
8P03|1|2|A|350
8P03|1|2|U|351
8P03|1|2|C|352
8P03|1|2|A|353
8P03|1|2|A|354
*
8P03|1|2|U|386
8P03|1|2|G|387
8P03|1|2|A|388
8P03|1|2|C|389
8P03|1|2|C|390
8P03|1|2|A|391
8P03|1|2|C|392
8P03|1|2|G|393
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- 40S ribosomal protein S8
- Chain N
- 40S ribosomal protein S11
- Chain Z
- 40S ribosomal protein S23
Coloring options: