IL_8P03_052

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

8P03|1|2|G|929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P03_052 not in the Motif Atlas

Homologous match to IL_8C3A_438

Geometric discrepancy: 0.0787

The information below is about IL_8C3A_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8P03|1|2|C|927
8P03|1|2|G|928
8P03|1|2|G|929
8P03|1|2|G|930
8P03|1|2|G|931
*
8P03|1|2|C|1003
8P03|1|2|A|1004
8P03|1|2|A|1005
8P03|1|2|G|1006

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

ribosomal protein eS1

Chain P

ribosomal protein uS15

Chain b

40S ribosomal protein S26