IL_8P09_016

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

8P09|1|2|U|296, 8P09|1|2|G|299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_016 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3671

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

8P09|1|2|C|213
8P09|1|2|A|214
8P09|1|2|U|215
8P09|1|2|U|216
*
8P09|1|2|A|293
8P09|1|2|C|294
8P09|1|2|C|295
8P09|1|2|U|296
8P09|1|2|C|297
8P09|1|2|G|298
8P09|1|2|G|299
8P09|1|2|G|300

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain K

40S ribosomal protein S8