IL_8P09_035
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUCGCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8P09|1|2|A|618, 8P09|1|2|U|620, 8P09|1|2|U|621
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P09_035 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1322
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8P09|1|2|G|601
8P09|1|2|U|602
8P09|1|2|C|603
8P09|1|2|G|604
8P09|1|2|C|605
8P09|1|2|A|606
8P09|1|2|G|607
*
8P09|1|2|C|614
8P09|1|2|G|615
8P09|1|2|G|616
8P09|1|2|U|617
8P09|1|2|A|618
8P09|1|2|A|619
8P09|1|2|U|620
8P09|1|2|U|621
8P09|1|2|C|622
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Ribosomal protein S3
- Chain Z
- 40S ribosomal protein S23
- Chain i
- 40S ribosomal protein S30
- Chain j
- Eukaryotic translation initiation factor 4C
Coloring options: