IL_8P09_054

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

8P09|1|2|G|929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_054 not in the Motif Atlas

Homologous match to IL_4V88_431

Geometric discrepancy: 0.125

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8P09|1|2|C|927
8P09|1|2|G|928
8P09|1|2|G|929
8P09|1|2|G|930
8P09|1|2|G|931
*
8P09|1|2|C|1003
8P09|1|2|A|1004
8P09|1|2|A|1005
8P09|1|2|G|1006

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

ribosomal protein eS1

Chain P

ribosomal protein uS15

Chain b

40S ribosomal protein S26