IL_8P09_058

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_058 not in the Motif Atlas

Geometric match to IL_4V88_436

Geometric discrepancy: 0.109

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8P09|1|2|C|1043
8P09|1|2|G|1044
8P09|1|2|A|1045
8P09|1|2|A|1046
8P09|1|2|G|1047
*
8P09|1|2|C|1063
8P09|1|2|G|1064
8P09|1|2|U|1065
8P09|1|2|A|1066
8P09|1|2|G|1067

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein uS11

Chain b

40S ribosomal protein S26