IL_8P09_086
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 8P09|1|2|C|1548, 8P09|1|2|A|1551, 8P09|1|2|A|1575
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P09_086 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.2516
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8P09|1|2|G|1545
8P09|1|2|U|1546
8P09|1|2|G|1547
8P09|1|2|C|1548
8P09|1|2|C|1549
8P09|1|2|U|1550
8P09|1|2|A|1551
8P09|1|2|C|1552
8P09|1|2|C|1553
*
8P09|1|2|G|1572
8P09|1|2|U|1573
8P09|1|2|A|1574
8P09|1|2|A|1575
8P09|1|2|C|1576
8P09|1|2|C|1577
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Ribosomal protein S3
- Chain M
- 40S ribosomal protein eS10
- Chain W
- 40S ribosomal protein uS10
- Chain e
- 40S ribosomal protein S29
Coloring options: