IL_8P09_107
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 8P09|1|2|G|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P09_107 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.3771
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8P09|1|2|G|1277
8P09|1|2|A|1278
8P09|1|2|C|1279
8P09|1|2|A|1280
8P09|1|2|G|1281
8P09|1|2|G|1282
8P09|1|2|A|1283
8P09|1|2|U|1284
8P09|1|2|U|1285
8P09|1|2|G|1286
*
8P09|1|2|C|1305
8P09|1|2|U|1306
8P09|1|2|C|1307
8P09|1|2|G|1308
8P09|1|2|A|1309
8P09|1|2|U|1310
8P09|1|2|U|1311
8P09|1|2|C|1312
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain M
- 40S ribosomal protein eS10
- Chain O
- 40S ribosomal protein S12
- Chain e
- 40S ribosomal protein S29
- Chain f
- ribosomal protein eS31
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