IL_8P09_108
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8P09|1|2|C|1327, 8P09|1|2|U|1490, 8P09|1|2|G|1493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P09_108 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.0977
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8P09|1|2|U|1325
8P09|1|2|G|1326
8P09|1|2|C|1327
8P09|1|2|A|1328
8P09|1|2|U|1329
8P09|1|2|G|1330
8P09|1|2|G|1331
*
8P09|1|2|U|1488
8P09|1|2|C|1489
8P09|1|2|U|1490
8P09|1|2|G|1491
8P09|1|2|U|1492
8P09|1|2|G|1493
8P09|1|2|A|1494
8P09|1|2|U|1495
8P09|1|2|G|1496
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Ribosomal protein S3
- Chain M
- 40S ribosomal protein eS10
- Chain W
- 40S ribosomal protein uS10
- Chain e
- 40S ribosomal protein S29
- Chain f
- ribosomal protein eS31
- Chain j
- Eukaryotic translation initiation factor 4C
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