IL_8P16_152

3D structure

PDB id

8P16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8P16|1|2|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P16_152 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0798

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8P16|1|2|U|684
8P16|1|2|G|685
8P16|1|2|U|686
8P16|1|2|A|687
8P16|1|2|G|688
*
8P16|1|2|C|699
8P16|1|2|G|700
8P16|1|2|U|701
8P16|1|2|A|702
8P16|1|2|G|703
8P16|1|2|A|704
8P16|1|2|G|705
8P16|1|2|A|706

Current chains

Chain 2

16S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain p

Small ribosomal subunit protein uS11