3D structure

PDB id
8P17 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E167K RF2 on E. coli 70S release complex with UGG (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.78 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
8P17|1|2|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P17_147 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.0947
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

8P17|1|2|U|605
8P17|1|2|G|606
8P17|1|2|A|607
8P17|1|2|A|608
8P17|1|2|A|609
8P17|1|2|U|610
8P17|1|2|C|611
8P17|1|2|C|612
*
8P17|1|2|G|628
8P17|1|2|A|629
8P17|1|2|A|630
8P17|1|2|C|631
8P17|1|2|U|632
8P17|1|2|G|633

Current chains

Chain 2
16S RNA

Nearby chains

Chain i
Small ribosomal subunit protein uS4
Chain m
Small ribosomal subunit protein uS8
Chain u
Small ribosomal subunit protein bS16
Chain v
Small ribosomal subunit protein uS17

Coloring options:


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