IL_8P18_175

3D structure

PDB id

8P18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P18_175 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1242

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8P18|1|2|C|1303
8P18|1|2|G|1304
8P18|1|2|G|1305
8P18|1|2|A|1306
8P18|1|2|U|1307
8P18|1|2|U|1308
*
8P18|1|2|A|1329
8P18|1|2|U|1330
8P18|1|2|G|1331
8P18|1|2|A|1332
8P18|1|2|A|1333
8P18|1|2|G|1334

Current chains

Chain 2

16S rRNA

Nearby chains

Chain r

Small ribosomal subunit protein uS13