IL_8P2F_032

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

ACGAGG*CCGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2F_032 not in the Motif Atlas

Geometric match to IL_8GLP_051

Geometric discrepancy: 0.3903

The information below is about IL_8GLP_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.1

Basepair signature

cWW-cWW-L-R-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

8P2F|1|A|A|920
8P2F|1|A|C|921
8P2F|1|A|G|922
8P2F|1|A|A|923
8P2F|1|A|G|924
8P2F|1|A|G|925
*
8P2F|1|A|C|942
8P2F|1|A|C|943
8P2F|1|A|G|944
8P2F|1|A|A|945
8P2F|1|A|A|946
8P2F|1|A|U|947

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L16