IL_8P2F_042

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

8P2F|1|A|U|1105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2F_042 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1825

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

8P2F|1|A|G|1103
8P2F|1|A|U|1104
8P2F|1|A|U|1105
8P2F|1|A|G|1106
*
8P2F|1|A|C|1120
8P2F|1|A|A|1121
8P2F|1|A|U|1122
8P2F|1|A|C|1123

Current chains

Chain A

23S ribosomal RNA

Nearby chains