IL_8P2F_171

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2F_171 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1178

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8P2F|1|a|C|1313
8P2F|1|a|G|1314
8P2F|1|a|G|1315
8P2F|1|a|A|1316
8P2F|1|a|U|1317
8P2F|1|a|U|1318
*
8P2F|1|a|A|1339
8P2F|1|a|U|1340
8P2F|1|a|G|1341
8P2F|1|a|A|1342
8P2F|1|a|A|1343
8P2F|1|a|G|1344

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S13