IL_8P2G_117
3D structure
- PDB id
- 8P2G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.02 Å
Loop
- Sequence
- CGAUGGUAG*CUAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P2G_117 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.1155
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8P2G|1|B|C|69
8P2G|1|B|G|70
8P2G|1|B|A|71
8P2G|1|B|U|72
8P2G|1|B|G|73
8P2G|1|B|G|74
8P2G|1|B|U|75
8P2G|1|B|A|76
8P2G|1|B|G|77
*
8P2G|1|B|C|94
8P2G|1|B|U|95
8P2G|1|B|A|96
8P2G|1|B|G|97
8P2G|1|B|A|98
8P2G|1|B|G|99
8P2G|1|B|U|100
8P2G|1|B|A|101
8P2G|1|B|G|102
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 50S ribosomal protein L16
- Chain Y
- 50S ribosomal protein L25
- Chain Z
- 50S ribosomal protein L27
Coloring options: