3D structure

PDB id
8P2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.02 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P2G_154 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.061
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

8P2G|1|a|G|896
8P2G|1|a|G|897
8P2G|1|a|A|898
8P2G|1|a|G|899
8P2G|1|a|U|900
8P2G|1|a|A|901
8P2G|1|a|C|902
8P2G|1|a|G|903
*
8P2G|1|a|U|914
8P2G|1|a|G|915
8P2G|1|a|A|916
8P2G|1|a|A|917
8P2G|1|a|A|918
8P2G|1|a|C|919

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain m
30S ribosomal protein S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2626 s