IL_8P2K_021
3D structure
- PDB id
- 8P2K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and METAP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 8P2K|1|A2|U|362, 8P2K|1|A2|C|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P2K_021 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.101
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8P2K|1|A2|U|360
8P2K|1|A2|A|361
8P2K|1|A2|U|362
8P2K|1|A2|C|363
8P2K|1|A2|A|364
8P2K|1|A2|A|365
*
8P2K|1|A2|U|397
8P2K|1|A2|G|398
8P2K|1|A2|A|399
8P2K|1|A2|C|400
8P2K|1|A2|C|401
8P2K|1|A2|A|402
8P2K|1|A2|C|403
8P2K|1|A2|G|404
Current chains
- Chain A2
- 18s rRNA
Nearby chains
- Chain Ah
- 40S ribosomal protein S8
- Chain Ak
- 40S ribosomal protein S11
- Chain Aw
- 40S ribosomal protein S23
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
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