IL_8P2K_034

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGG(OMU)AAUUC

Length

16 nucleotides

Bulged bases

8P2K|1|A2|A|629

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_034 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.1994

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8P2K|1|A2|G|612
8P2K|1|A2|U|613
8P2K|1|A2|G|614
8P2K|1|A2|C|615
8P2K|1|A2|C|616
8P2K|1|A2|A|617
8P2K|1|A2|G|618
*
8P2K|1|A2|C|625
8P2K|1|A2|G|626
8P2K|1|A2|G|627
8P2K|1|A2|OMU|628
8P2K|1|A2|A|629
8P2K|1|A2|A|630
8P2K|1|A2|U|631
8P2K|1|A2|U|632
8P2K|1|A2|C|633

Current chains

Chain A2

18s rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ac

40S ribosomal protein S3

Chain Aw

40S ribosomal protein S23